This is a position for a public health focused Bioinformatics subject matter expert:

Responsibilities include:
Develop standard operating procedures and quality documentation for sequence analysis pipelines
Provide technical assistance on a variety of tasks and assignments related to genomic epidemiologic studies on the evolution of viruses
Apply analytical and interpretive skills to analyze next generation sequence data from global surveillance of viruses
Provide data management and analytic support for global surveillance platforms
Genome assembly of next generation sequencing from Illumina required, PacBio and Minion (all three preferred)
Experience with Integrative Genomics Viewer (IGV) and samstools
Experience with Linux, command-line interfaces, and automation via Shell scripting
Experience in programming (R, Python, Perl, etc.), version control (GIT) & best practices
Understanding of data management fundamentals (SQL, relational model, OLAP)
Knowledge of workflow management tools (Snakemake, Nextflow) a big plus
Familiarity with business intelligence tools (Tableau, PowerBI)
Exposure and literacy with distributed and parallel computing (Spark, Hadoop, AWS (Amazon web service), Grid Engine / HPC (High Performance Computing)) is greatly preferred

Qualifications: Bachelor's or Master’s degree in Bioinformatics, Computational Biology, Computer Science, Mathematics, or related field; 3-5 years relevant work experience.